Package: intervals 0.15.5

intervals: Tools for Working with Points and Intervals

Tools for working with and comparing sets of points and intervals.

Authors:Richard Bourgon [aut], Edzer Pebesma [cre]

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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
intervals/json (API)

# Install 'intervals' in R:

install.packages('intervals', repos = c('https://edzer.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/edzer/intervals/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

sgd - Yeast gene model sample data

On CRAN:

cpp

9.87 score 12 stars 113 packages 207 scripts 18k downloads 32 exports 0 dependencies

Last updated from:44ba83053c. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	128
linux-devel-x86_64	OK	135
source / vignettes	OK	184
linux-release-arm64	OK	126
linux-release-x86_64	OK	133
macos-release-arm64	OK	94
macos-release-x86_64	OK	308
macos-oldrel-arm64	OK	103
macos-oldrel-x86_64	OK	147
windows-devel	OK	74
windows-release	OK	87
windows-oldrel	OK	81
wasm-release	OK	106

Exports:adjust_closure as.matrix close_intervals closed closed<-clusters coerce contract distance_to_nearest empty expand head initialize interval_complement interval_difference interval_included interval_intersection interval_overlap interval_union Intervals Intervals_full open_intervals plot reduce show size split t tail type type<-which_nearest

Dependencies:

Overview of the intervals package.

1 Introduction | 2 Interpretation of objects | 3 Floating point and intervals over R | 4 Notes on implementation | 5 Session information

Rendered fromintervals_overview.Rnwusingutils::Sweave

Last update: 2014-09-19
Started: 2014-09-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Tools for working with points and intervals	intervals-package intervals
Extract matrix of endpoints	as.matrix as.matrix,Intervals_virtual-method as.matrix.Intervals_virtual
Combine different interval matrix objects	c c.Intervals c.Intervals_full
Re-represent integer intervals with open or closed endpoints	adjust_closure adjust_closure,Intervals-method adjust_closure,Intervals_full-method close_intervals close_intervals,Intervals_virtual-method open_intervals open_intervals,Intervals_virtual-method
Identify clusters in a collection of positions or intervals	clusters clusters,Intervals_virtual-method clusters,numeric-method
Compute distance to nearest position in a set of intervals	distance_to_nearest distance_to_nearest,Intervals_virtual_or_numeric,Intervals_virtual_or_numeric-method
Identify empty interval rows	empty empty,Intervals-method empty,Intervals_full-method
Expand or contract intervals	contract contract,Intervals_virtual-method expand expand,Intervals_virtual-method
Compute the complement of a set of intervals	interval_complement interval_complement,Intervals_virtual-method
Compute set difference	interval_difference interval_difference,Intervals_virtual,Intervals_virtual-method
Assess inclusion of one set of intervals with respect to another	interval_included interval_included,Intervals,Intervals-method interval_included,Intervals_full,Intervals_full-method
Compute the intersection of one or more sets of intervals	interval_intersection interval_intersection,Intervals_virtual-method interval_intersection,missing-method
Assess overlap from one set of intervals to another	interval_overlap interval_overlap,ANY,missing-method interval_overlap,Intervals_virtual_or_numeric,Intervals_virtual_or_numeric-method interval_overlap,missing,ANY-method
Compute the union of intervals in one or more interval matrices	interval_union interval_union,Intervals_virtual-method interval_union,missing-method
Class "Intervals_virtual_or_numeric"	Intervals_virtual_or_numeric-class
Class "Intervals_virtual"	closed closed,Intervals_virtual-method coerce,Intervals_virtual,character-method head,Intervals_virtual-method initialize,Intervals_virtual-method Intervals_virtual-class is.na,Intervals_virtual-method show,Intervals_virtual-method t,Intervals_virtual-method tail,Intervals_virtual-method type type,Intervals_virtual-method type<- type<-,Intervals_virtual-method
Classes "Intervals" and "Intervals_full"	closed<- closed<-,Intervals-method closed<-,Intervals_full-method coerce,Intervals,Intervals_full-method coerce,Intervals_full,Intervals-method initialize,Intervals-method initialize,Intervals_full-method Intervals Intervals-class Intervals_full Intervals_full-class [,Intervals-method [,Intervals_full-method [<-,Intervals,ANY,missing,Intervals_virtual-method [<-,Intervals_full,ANY,missing,Intervals_virtual-method
Plotting methods for interval objects	plot plot,Intervals,ANY-method plot,Intervals,missing-method plot,Intervals_full,ANY-method plot,Intervals_full,missing-method plot.Intervals plot.Intervals_full
Compactly re-represent the points in a set of intervals	reduce reduce,Intervals_virtual-method
Yeast gene model sample data	sgd
Compute interval sizes	size size,Intervals-method size,Intervals_full-method
Split an intervals object according to a factor	split split,Intervals_virtual-method split.Intervals_virtual
Identify nearest member(s) in a set of intervals	which_nearest which_nearest,Intervals_virtual,Intervals_virtual-method which_nearest,Intervals_virtual,numeric-method which_nearest,numeric,Intervals_virtual-method which_nearest,numeric,numeric-method