Package: intervals 0.15.5
intervals: Tools for Working with Points and Intervals
Tools for working with and comparing sets of points and intervals.
Authors:
intervals_0.15.5.tar.gz
intervals_0.15.5.zip(r-4.5)intervals_0.15.5.zip(r-4.4)intervals_0.15.5.zip(r-4.3)
intervals_0.15.5.tgz(r-4.4-x86_64)intervals_0.15.5.tgz(r-4.4-arm64)intervals_0.15.5.tgz(r-4.3-x86_64)intervals_0.15.5.tgz(r-4.3-arm64)
intervals_0.15.5.tar.gz(r-4.5-noble)intervals_0.15.5.tar.gz(r-4.4-noble)
intervals_0.15.5.tgz(r-4.4-emscripten)intervals_0.15.5.tgz(r-4.3-emscripten)
intervals.pdf |intervals.html✨
intervals/json (API)
NEWS
| # Install 'intervals' in R: |
| install.packages('intervals', repos = c('https://edzer.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/edzer/intervals/issues
Datasets:
- sgd - Yeast gene model sample data
Last updated 3 months agofrom:44ba83053c. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win-x86_64 | OK | Oct 27 2024 |
| R-4.5-linux-x86_64 | OK | Oct 27 2024 |
| R-4.4-win-x86_64 | OK | Oct 27 2024 |
| R-4.4-mac-x86_64 | OK | Oct 27 2024 |
| R-4.4-mac-aarch64 | OK | Oct 27 2024 |
| R-4.3-win-x86_64 | OK | Oct 27 2024 |
| R-4.3-mac-x86_64 | OK | Oct 27 2024 |
| R-4.3-mac-aarch64 | OK | Oct 27 2024 |
Exports:adjust_closureas.matrixclose_intervalsclosedclosed<-clusterscoercecontractdistance_to_nearestemptyexpandheadinitializeinterval_complementinterval_differenceinterval_includedinterval_intersectioninterval_overlapinterval_unionIntervalsIntervals_fullopen_intervalsplotreduceshowsizesplitttailtypetype<-which_nearest
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Tools for working with points and intervals | intervals-package intervals |
| Extract matrix of endpoints | as.matrix as.matrix,Intervals_virtual-method as.matrix.Intervals_virtual |
| Combine different interval matrix objects | c c.Intervals c.Intervals_full |
| Re-represent integer intervals with open or closed endpoints | adjust_closure adjust_closure,Intervals-method adjust_closure,Intervals_full-method close_intervals close_intervals,Intervals_virtual-method open_intervals open_intervals,Intervals_virtual-method |
| Identify clusters in a collection of positions or intervals | clusters clusters,Intervals_virtual-method clusters,numeric-method |
| Compute distance to nearest position in a set of intervals | distance_to_nearest distance_to_nearest,Intervals_virtual_or_numeric,Intervals_virtual_or_numeric-method |
| Identify empty interval rows | empty empty,Intervals-method empty,Intervals_full-method |
| Expand or contract intervals | contract contract,Intervals_virtual-method expand expand,Intervals_virtual-method |
| Compute the complement of a set of intervals | interval_complement interval_complement,Intervals_virtual-method |
| Compute set difference | interval_difference interval_difference,Intervals_virtual,Intervals_virtual-method |
| Assess inclusion of one set of intervals with respect to another | interval_included interval_included,Intervals,Intervals-method interval_included,Intervals_full,Intervals_full-method |
| Compute the intersection of one or more sets of intervals | interval_intersection interval_intersection,Intervals_virtual-method interval_intersection,missing-method |
| Assess overlap from one set of intervals to another | interval_overlap interval_overlap,ANY,missing-method interval_overlap,Intervals_virtual_or_numeric,Intervals_virtual_or_numeric-method interval_overlap,missing,ANY-method |
| Compute the union of intervals in one or more interval matrices | interval_union interval_union,Intervals_virtual-method interval_union,missing-method |
| Class "Intervals_virtual_or_numeric" | Intervals_virtual_or_numeric-class |
| Class "Intervals_virtual" | closed closed,Intervals_virtual-method coerce,Intervals_virtual,character-method head,Intervals_virtual-method initialize,Intervals_virtual-method Intervals_virtual-class is.na,Intervals_virtual-method show,Intervals_virtual-method t,Intervals_virtual-method tail,Intervals_virtual-method type type,Intervals_virtual-method type<- type<-,Intervals_virtual-method |
| Classes "Intervals" and "Intervals_full" | closed<- closed<-,Intervals-method closed<-,Intervals_full-method coerce,Intervals,Intervals_full-method coerce,Intervals_full,Intervals-method initialize,Intervals-method initialize,Intervals_full-method Intervals Intervals-class Intervals_full Intervals_full-class [,Intervals-method [,Intervals_full-method [<-,Intervals,ANY,missing,Intervals_virtual-method [<-,Intervals_full,ANY,missing,Intervals_virtual-method |
| Plotting methods for interval objects | plot plot,Intervals,ANY-method plot,Intervals,missing-method plot,Intervals_full,ANY-method plot,Intervals_full,missing-method plot.Intervals plot.Intervals_full |
| Compactly re-represent the points in a set of intervals | reduce reduce,Intervals_virtual-method |
| Yeast gene model sample data | sgd |
| Compute interval sizes | size size,Intervals-method size,Intervals_full-method |
| Split an intervals object according to a factor | split split,Intervals_virtual-method split.Intervals_virtual |
| Identify nearest member(s) in a set of intervals | which_nearest which_nearest,Intervals_virtual,Intervals_virtual-method which_nearest,Intervals_virtual,numeric-method which_nearest,numeric,Intervals_virtual-method which_nearest,numeric,numeric-method |
